In this document there is a mapping for move to
move2 functions. Not all functions will have a direct
replacement, at least not initially. In some cases this is by design to
make the scope of the move2 package more streamlined. Also
not that in many cases the functions are not direct drop in replacement
and return slightly different formats (e.g. distance and speed functions
now always return vectors). Rather consider this mapping a pointer of
where to start looking if you search a move2
equivalent.
angle() |
mt_azimuth() |
|
trackId() |
mt_track_id() |
|
timestamps() |
mt_time() |
|
timestamps()<- |
mt_set_time() |
|
timeLag() |
mt_time_lags() |
|
distance(), seglength()
|
mt_distance() |
|
speed() |
mt_speed() |
|
moveStack() |
mt_stack() |
|
n.indiv() |
mt_n_tracks() |
|
n.locs() |
nrow()/table(mt_track_id())
|
|
idData() |
mt_track_data() |
|
idData()<- |
mt_set_track_data() |
|
turnAngleGc() |
mt_turnangle() |
|
unUsedRecords() |
x[sf::st_is_empty(x),] |
|
namesIndiv() |
unique(mt_track_id()) |
|
getDuplicatedTimestamps() |
mt_is_time_ordered(..., non_zero = TRUE) |
This is not a perfect replacement, but atleast gives a
warning where duplicated times occur. |
citations(),
citations()<-
|
mt_track_data()$citation,
mutate_track_data(x, citation=...)
|
Citations are now a track properties, this helps when
combining studies. |
licenseTerms(),
licenseTerms()<-
|
mt_track_data()$license_type,
mutate_track_data(x, license_type=...),
mt_track_data()$license_terms,
mutate_track_data(x, license_terms=...)
|
Licenses are not tracked per object separate anymore,
rather they are considered a track attribute. This should facilitate
more easly traceing what study has what license. |
split() |
split(x, mt_track_id(x)) |
|
plot() |
plot(),
plot(mt_track_lines())
|
|
equalProj() |
sf::st_crs()==sf::st_crs() |
|
burst(), burstId(),
burstId()<-, plotBursts()
|
|
Currently bursting is not explicit functionality of the
package, group_by might replace some functionality that is
however grouping per point and not per segment |
show() |
print() |
|
move() |
mt_as_move2() |
|
interpolateTime() |
mt_interpolate() |
|
thinTrackTime() |
mt_filter_per_interval() |
These two functions are not exactly doing the same, the
new one subsets the data to a specified time window, but also retains
segments with larger timelags |
getMovebankStudies() |
movebank_download_study_info() |
|
getMovebankStudy() |
movebank_download_study_info(id = ...) |
|
getMovebankData() |
movebank_download_study() |
|
searchMovebankStudies() |
|
|
movebankLogin() |
movebank_store_credentials(),
movebank_remove_credentials(),
movebank_handle()
|
|
getMovebank() |
movebank_retrieve() |
|
getMovebankReferenceTable() |
movebank_download_deployment() |
|
getMovebankSensors() |
movebank_retrieve(entity_type="sensor", tag_study_id=...),
movebank_retrieve(entity_type="tag_type")
|
|
| getMovebankID() |
movebank_get_study_id() |
|
getMovebankAnimals() |
movebank_download_deployment(),
movebank_retrieve(entity_type = "individual", study_id = ...)
|
|
getMovebankNonLocationData() |
movebank_download_study(study_id=..., sensor_type_id='...') |
see movebank_retrieve('tag_type') for
valid sensor_type_id
|
getMovebankLocationData() |
movebank_download_study(),
movebank_retrieve(entity_type='event', study_id=...)
|
|
getMovebankSensorsAttributes() |
movebank_retrieve(entity_type = "study_attribute", study_id=..., sensor_type_id=...) |
see movebank_retrieve('tag_type') for
valid sensor_type_id
|
These function will go for a while without an direct replacement as
utilization densities are currently not part of the move2
package. They might also be reproduced in a separate package instead of
directly in move2.
UDStack() |
|
|
getVolumeUD() |
|
|
contour() |
|
|
hrBootstrap() |
|
|
brownian.bridge.dyn() |
|
|
brownian.motion.variance.dyn() |
|
|
dynBGB() |
|
|
dynBGBvariance() |
|
|
raster2contour() |
|
|
getMotionVariance() |
|
|
outerProbability() |
|
|
Todo
For the following list either a mapping needs to be made or no
alternative exists (yet)
# corridor
# emd
# getDataRepositoryData
# lines
# move2ade
# points
# sensor
# summary
# thinDistanceAlongTrack
# thinTrackTime
# unUsedRecords<-